Sign is irrelevant in this case. Either if you are charging or discharging capacitors through MOSFET channel resistance, the loss energy absorbed by the transistor is positive.
When you discharge a capacitor from Vbus to 0 (Q1) and charge a capacitor from 0 to Vbus (Q2), energy signs are opposed and their quantities are exact the same (absolute value). If you look sharp into the first line of your equation, you can easily see that the result is ZERO assuming linear capacitors.
The only way I arrive to your result, is taking absolute value of the first integral in post #42, which the physical interpretation would be to say: Q1 consumes energy from the Bus source because that means Q1 is again charging ! --> Impossible. Q1 is turning ON which actually discharges energy to the circuit i.e. supplies energy to the circuit from its own charged caps.
If I use "dV" instead of "-dV", for the transition specified (Q1 -> ON, Q2-> OFF), you actually get: Esw= - avg(Coss)*Vbus
2, not positive.
Take this equation: "∫Coss(V) V dV + ∫Coss(V)(Vdc - V) dV " and go one step back, which is the first line of my equation in post #42. Can you see that if caps are linear, integrals are canceled out ? First integral is caps energy Eoss1 (in negative) and second integral is energy Eoss2 (in positive), which are cancelling out for equal transistors and linear caps.
Your mistake is that you are saying that the capacitor that is discharging (Q1) is taking energy from the source. One capacitor will take energy from the source to charge itself while the other discharges energy i.e. does not take energy from the source.
The additional energy from the bus that you see is in the overlap loss. If you do not stick only to caps energy, you will see.