Are you driving the BLDC motor in a way that only 2 phases are active at any one time. This is a pretty common way to drive BLDC motors. Usually the top side switch of the inverter is turned on and the bottom switch of another phase gets the PWM signal. Thus when the bottom switch is turned on the phase current rises and is equal to the Bus current. When the bottom switch turns off, the bus current drops to zero while the inductance of the motor causes the phase current to decay linearly. So, since the bus current drops to zero for a portion of the cycle and the phase current doesn't, the phase current has a much higher average value than the bus current. Which is normal.