are you sure that the load is small - have you tried to verify this? Perhaps there is some low impedance fault somewhere that is loading the module down - not enough to cause an overcurrent condition but enough to run it hot.
I would suggest trying to isolate the module on the board such that most or all of the load on the 5V rail is removed - perhaps the easiest way to do this would be to remove the module from the board and then power it up from 12V (you can air-wire in resistors, etc to set the output to 5V). If the module is getting hot in this condition, then there is something wrong with it and you should return it. If the module is regulating without getting warm in this condition, then you have more load on your board than you know about and you need to re-assess your 5V loading requirements.
If you have a bench power supply that can put out 5V, you can connect that to your board with the Atresyn module removed. Tie a low valued power resistor in line with the 5V from the power supply and measure the drop to determine the load current.