Reflected signal has a band-stop characteristic with respective phase.Why do you say that the phase of the reflected signal will change?
Circulator port c output has two unwanted carrier components due to2.So what is the logic of putting this carrier nulling section if need to compare the YIG RF signal with the main oscillator RF signal?
I guess you can't. You can't probe 10 GHz with an oscilloscope. There are only few circuit "points" that can be connected to a SA without affecting operation. For smallest impact, you'll e.g. use a coupler with high attenuation, -20 dB or more. Can be used to monitor oscillator output with SA.i can view each point on the diagram using spectrum analyzer or osciloscope.
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