Additionally the probe "loop area" (between tip+shaft,
and ground clip) is an inductive pickup for all the
inductor leakage field, and your choice of ground-
point embeds more or less I*R, L*dI/dt voltage
noise from circulating ground "plane" currents to what
the 'scope channel sees.
Output filter wants low ESL/ESR, but the inductor also
contributes spiking through its interwinding capacitance.
If you think the switching noise is unexpected, try adding
a shunt C to your inductor model that corresponds to the
advertised SRF. This is what your output filter must knock
down. If you have 100V input and you want 100mV spike
amplitude, that's 1000:1 attenuation and if the winding
has 10pF shunt C, you'd need >= 10nF of really good HF cap
returned as tightly as possible to prime ground (along with
the fat baseband cap to soak up the 100kHz designed
ripple current).