Hi cherne-he,
Yes, S11 is the reflection coefficient as seen by port 1.
A few comments on volker's link...
The setup with two wave ports should be just as accurate as one wave port with a radiation boundary on the far side. However, assigning radiation boundaries to the sides of the simulation may be introducing some error, as I've had issues with radiation boundaries being perpendicular to wave ports. If you can handle modelling the absorber as part of an infinite array, consider changing the tangential boundaries to perfect Es along one axis and perfect Hs along the other. Also, to model a plane wave, the wave port has to fill up the entire face of your bounding vacuum box, contrary to what was suggested in that thread (you can view the fields in both cases to find out why).
And to reply to volker:
From your response I would guess that you don't know what a HFSS wave port is. He's not using a lumped port. Why would you give this poor man such bad advice?