What you have is probably essentially OK. You would just need to size the power drivers accordingly to handle the current/voltage/power required. You showed two, but may only need one. There are plenty of FETs that can handle 35A or more. I would probably pick something at least double the current rating to handle switching transients, etc., and probably also at least double the max expected voltage. From there, the power rating and any heatsinking considerations would be made. Since this is PWM-driven, the power loss when switched on will be minimal (just Rdson*I), but there will be switching losses as the FET turns on and off (and the Rds value increases). So the longer the switching time, the higher the loss. But you also don't want it switching too quickly which may cause unacceptable electrical and EM noise. So you probably want to include a series gate resistor and you can adjust that value to compromise between smooth switching and power dissipation.
I would add a good cap after the bridge rectifier if you weren't already planning that. I'm not sure what type of load you are driving, but I think a fuel cell could be modeled as a resistive load, so you probably don't need to worry about snubbers, flyback diodes, etc.