It may be that the temperature rise at faster pulse rates, lowers the laser efficacy and the internal voltage of the diode also drops with rising temperature. So a dimmer output is an indication your driver is pulsing beyond its rated current DC and at risk of burning out.
Verify by monitoring voltage on a 50mV current shunt and compare with specs . Your driver may also have a surge from a charged capacitor in a ( not so ) " Constant Current" sink.
This is normal temperature effect for LEDs and lasers when pulsed beyond their continuous rated DC current, even though the voltage will rise with current due to bulk resistance (ESR) instantaneously. With very low duty cycles, some laser diodes are designed for 0.1% duty cycles and high currents producing 75W peaks in a device only rated for 75mW of thermal power. Efficacy starts at <10% of thermal power in and reduces with rising temperature above threshold.
The eye will perceive a brighter result with faster rep. Rates or or pulse width only if the pulse width is much shorter than the eye response time, which varies.
For relatively long fixed times > 1-10ms , the rep rate will not increase the apparent brightness, but reduce the perception of flicker.
Flicker
Flicker is more sensitive on moving objects and more sensitive on peripheral vision, so 60Hz might start to appear continuous but if moving such as car tail LED lights, a much faster rep. Rate is needed to appear continuous such as 3 kHz.