NOW I understand...you were concerned about the inductor ringing from a phase-control waveform!
Initially I had thought you were only talking about the power-on phase. Sorry!
Well, like everything else, one can have great ideas on paper and simulations, but actual testing may dictate your next steps. As the attached app note indicates, these components are for EMI purposes. So they may have tested the prototype and found that resistor damping helped them meet the EMI requirements for that circuit.
One thing that I have learned about "Reference Circuits" is that they provide a good platform for the engineer to "play" with a particular IC. But the circuit most likely is not optimized, may not fully apply to your requirements, or use certain components which may be difficult to obtain. As such, substitutions and changes are inevitable, and each engineer is free to add his own set of design guidelines.
So, if you can meet EMI, cost and size requirements with a diode solution, go for it.