Hi,
seeing your pictures I´m not surprised that there is noise.
I rather am surprised that it works at all.
Switching power electronics need careful signal wiring.
Very short traces (wires) rather 10mm than 10 cm, low impedance (thick wiring does not mean low impedance), GND planes on PCBs, start point GND wiring, avoiding GND loops, avoiding GND bounce ....
A forum can´t teach all this in a thread.. it will be a longer and intensive process of learning.
You use parts like IR2112 and MOSFETs ... designed for switch mode operation.
--> Go to their internet sites and look for design notes and application notes. All big companies provide a lot of very good documents. They are free. Use this. Maybe you don´t understand every detail of the application notes fro the beginning. This is quite normal
--> For the hardware I recommend to design (at least) all power circuitry on one PCB. The smaller the better (for my taste). One central point where all GND refer to (star GND wiring). And keep on the application notes.
Klaus