In the previous schematic, R24-(D9)-R30 and R28-(D16)-R30 are voltage dividers and the middle voltage is compared to a fixed threshold (IN-, 2.5V).
In the new schematic, you don't have any comparator nor that voltage dividers thus the shutdown signal might be inappropriate for a MCU (at least if you're not feeding it to an ADC input).
Anyway, it's better to keep those voltage dividers and the comparator IC and feed the opamp output (being a logical signal) to your MCU. Btw, don't forget to remove that diode across the output and IN+ of the opamp (HIGH output self-sustaining function).