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Hi [USER=689410]@sidun.av[/USER] thank you very much for your help and sorry I didn't get back sooner. I did as you instruct and analyzed the cell and found out the solution. I was so excited that I finally cleared my LVS report that I forgot to get back to this post. Hahahaha

So the solution was as simple as keeping the purpose of the metal layer as strictly as possible. So, I used M1 pin for my "in" net but problem arises when I also choose M1 pin for the label. So I put changed the label in M1 with its purpose as "label" or in some cases "lbl". In that way, the lvs have finally recognized the nets as ports!!!

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