On the circuit animation, it looks like there are 5 LEDs on the left side, of which three are white LEDs, and one is green and another is red?
If so, it is good to remove the 100 ohm resistor, and instead have 5 separate resistors, each one in series with each LED, much like the LEDs
on the right side of the simulation. 100 ohms may be too low for the the red and green LEDs (not sure about white ones), but if you know the
current and the Vf of the LEDs (from the datasheet), then it is easy to calculate: R = (Vin-Vf / I), so if Vin is 9V, and Vf is 2v and I is 20mA, then R=
7/0.02 = 350ohms (i.e. use 330 ohms as the closest value). It should be easy to add the resistors on the PCB, looks like there is some room top-right area.
On the circuit board, it looks like the red and green are in series, which is slightly different from the simulator btw.
I'm not familiar with this software, but normally you'd draw the circuit diagram (using say free version of Eagle), and then it would automatically generate a board from it - you'd move the components to the right places, then place tracks or auto-route, and it would tell you if the tracks were incorrect.