As the period of your device increases relative to your operating wavelength, the device will diffract into more modes. It is critical that you use enough modes to include all the propagating ones. The others are cutoff and decay quickly with distance. There is a button called something like "Analyze Modes" that will calculate the attenuation of these cutoff modes. If you do not include these, you need to make sure that there is enough distance between your device and your Floquet port so that they attenuate to essentially zero at the port. Don't let the evanescent modes touch your Floquet port. There is a deembed option that will numerically move the port away from the device, I think. I haven't played with that much and I am not completely sure what it actually does.
Hope this helps!