well, if u look at a system that hooks up to an outdoors antenna, u will likely find lightning protection circuits. Luckily microwave frequencies pass thru very small capacitances, so the first line of defense is a small series capacitor (maybe 5 pF) and a really good low ohm return path to earth ground from the coaxial cable shield.
After that, u can add MOV devices (IF they are very low capacitance) or spark gap gas tubes across the RF center connector to ground. If you have a narrowband application, u can use a short circuited stub one-half wavelength long in parallel with the input connector.
Sometimes u need to add passive protection from high RF power blowing stuff up, so they make PIN "limiter" diodes that automatically turn into momentary short circuits if 1 watt or higher RF power hits them.
Other than that....for most modern low voltage RF equipment, there is no protection. Fuses blow...but then someone has to drive to the mountain top to replace them....so they are not as useful as one might think!!!!