Here is what i learned from FEKO LITE:
1) Do not forget to make UNION, to connect all your microstrip+wire+ground. Select them all and press union. And their type must be CONDUCTOR.
2) When you using infinite substrate (Solution>Infinite Planes), it is easy to use microstrip port directly on your microstrip structure.
3) When you use finite substrate, you can use "wire+wire port" or "polygon to ground + split + edge port".
Search for examples in FEKO: microstrip patch antenna on finite substrate, on infinite substrate, with pin feed, with edge feed. When you open this examples, there is a text note appear with small tutorial. I remember i read this tutorials many times before i understand how to make edge port on finite substrate. Try open this examples, turn on transparency and fly around and see how it's made, and note that all parts are in one single UNION.