Hello Winsu,
The pad centers are the points of reference when distance measuring. They should be the same
as the physical capacitor itself.
Unfortunately pad distances vary with higher working voltages and larger capacitance values.
You should design your capacitor parts to include the different distances and pad sizes.
i.e. The higher the capacitance and distance between the pads: then you need to make the pad
sizes larger, as well as the appropriate hole size.
I hope the above helps.
Regards,
Relayer