The biggest (only!) source of noise from a DC motor is the arcing at the brushes, this should be dealt with directly at the motor its self. Connect a pair of capacitors directly from each brush to the motor chassis, they should be disc ceramics , about .01 MF should do. The motor case should then be connected to what ever goes for earth (- volts?) on the car. This is to keep the noisy bits as small and as short as possible else if the capacitors are at the far ends of the motor leads, the leads will act as aerials and radiate the noise. As mentioned RF chokes in the motor leads could help, but again they should be at the motor end.
Frank