BACK to basics... CAN was never designed for a common ground system as it is a distributed system with different grounds... any number of nodes there will be no common ground..
It uses differential bus technique for minimising the noise in a signal...Reducing industrial noise is left to user to do externally
Ok, Yes so CAN is differential and uses a Transceiver.
And say 3 PCBs are powered by 400V-DCtoDC-24V-DCtoDC-5V then 5 other PCBs powered (same)400V-DCtoDC-(same)24V-DCtoDC-12V then individual PCB Linear Regs to 5V.
All CANs are connected. Is grounding loops even an issue here?
grounding is never an issue in CAN BUS communication. . Is your source 400V DC... each board will have a regulator of its own and does not need common ground.
sensors can be placed anywhere in the system and have transceivers o each board that in turn are connected through CAN bus to each other... we cant expect all sensors to have a common ground...