I am an Eagle user, not a KiCAD user. Assuming some similarities, your assumption that the component you created is the problem seems correct. If you are certain the component cannot be made without violating the minimum clearance, then your option is to decrease the minimum clearance. That option might make getting a board manufactured a problem.
Some clearance problems can be ignored by the manufacturer. I had one recently that involved a via in a pad. The manufacturer said basically, "We agree it's needed, and we do it all the time. Don't worry." On the other hand, if it is a routing issue, that is another matter.
What component is it? What is your minimum clearance setting? Can you post a larger view of the component's footprint?
John