It would be helpful to have a circuit diagram. I suspect that the capacitors are there to stop radio frequencies being picked up. Taking the 39 Pf cap first, if there is no series impedance in the feed to it, then a high proportion of the Vin will appear at the emitter of the transistor, 80 ->99%. this is in phase with the voltage on the base so the current through the 39 Pf will only be 20 -> 1% of that expected (more or less the same voltage at both ends of it), so it will actually act like a capacitor 20 -> 1% of its face value( 6.8 -> .39 Pf), so I would not expect it to have much effect at all. Can't make any sense of the 1000 Pf C->E, C-> earth reduces the out put at high frequencies, E-> - 20 X E (what you would expect at the collector) would increase the high frequency gain. To cunning for me!!
Frank