Welcome jcesar203,
I've been working a fair bit with MTL theory lately so this looks familiar. However, I'm not sure what you mean by "the total resistance and reactance or impedance of a single conductor". One conductor by itself does not mean anything in transmission line theory, are you looking to extract the input impedance seen at a specific port (set of two conductors)? As in one of your loops?
You are correct that the other currents (I1, I2, etc.) will affect the results... this is why the solution is a matrix and not a number. Therefore, if you are looking for a particular result, you need to specify what the boundary conditions are on every port. Keep in mind that the definition of Z-Parameters requires that every other port is open-circuited!
If you are looking at the impedance of a single loop (say, #1) then, when the rest of the ports are open-circuited, then the input impedance is simply Z11.
Hope this helps,
PlanarMetamaterials